DNA bar coding of Rattans and Phyllanthus: For developing fingerprints, resolving taxonomy and securing IPRs. Funded by Department of Biotechnology (DBT) New Delhi.

DNA bar coding of Rattans and Phyllanthus: For developing fingerprints, resolving taxonomy and securing IPRs. Funded by Department of Biotechnology (DBT) New Delhi.

Project Status: 
Completed

Rattans and Phyllanthus that are endemic and taxonomically intriguing have been collected from Western Ghats, Eastern Himalayas and Andaman and Nicobar Islands. DNA barcoding for 17 Phyllanthus species has been completed. This region (psbA-trnH) was also used to resolve the identity of Phyllanthus species used in raw drug trade. Six different species namely P.amarus, P.debilis, P.maderaspatensis, P.kozhikodianus, P.urinaria and P.fraternus were found in the trade samples collected from South India. A digital database of both Phyllanthus species and rattans has also been developed. A total of 53 rattan species have been collected out of which 16 species are from Andaman and Nicobar Islands, 15 species from Eastern Himalayas and 21species from Western Ghats. Thirty possible gene/gene regions were evaluated such as psbA-trnH, matK, 5sr RNA, ndhF 7-2133, ndhF 15-8, trnE-trnF, trnC-trnD, RPB2 and rps18-clpP for DNA barcoding of rattans. Combinatorial analysis was also done using psbA-trnH, matK and RPB2. But none of the regions could resolve the rattans at the species level.

Programme: 
Biodiversity Monitoring and Conservation Planning
PI: 
Dr. G Ravikanth

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Journal Articles

Subramanyam Ragupathy, Adam C. Faller, Dhivya Shanmughanandhan, Prasad Kesanakurti, R. Uma Shaanker, Gudasalamani Ravikanth, Ramalingam Sathishkumar, Narayanasamy Mathivanan, Jingyuan Song f, Jianping Han f, Steven Newmaster 2019 Exploring DNA quantity and quality from raw materials to botanical extracts Heliyon 5 (2019) e01935 https://doi.org/10.1016/j.heliyon.2019.e01935
Srirama R., Deepak H.B, Senthilkumar U., Ravikanth G., Gurumurthy B.R., Shivanna M.B., Chandrasekaran C.V., Amit Agarwal, Uma Shaanker R 2012 Hepatoprotective activity of Indian Phyllanthus Volume 50, 2012 - Issue 8
Ravikanth G., Srirama R., Ganeshaiah K.N. and Uma Shaanker R 2011 In pursuit of a universal barcode of plants: peril of followers? VOL. 101, NO. 3, 10 AUGUST 2011
Srirama R, Senthilkumar U, Ravikanth G, Sreejayan N, Gurumurthy B. R, Shivanna, M.B, Sanjappa, M, Ganeshaiah K.N and Uma Shaanker R 2010 Assessing species admixtures in raw drug trade of Phyllanthus, a hepato-protective plant using molecular tools 130 (2010) 208–215
Sumangala R. C., Naveen Kumar L., Ramesha B. T, Uma Shaanker R, Ganeshaiah K. N and Ravikanth G 2009 Development of micro satellite markers for a critically endangered species, Ceropegia fantastica from the Western Ghats, India. 10:1825
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Srirama R

  • Biodiversity Monitoring and Conservation Planning